MutaFix run: boltons-009
ranker nvidia/NVIDIA-Nemotron-3-Nano-30B-A3B · patcher nvidia/nemotron-3-super-120b-a12b · via Nebius Token Factory
- if not (self.closed): (injected bug)+ if self.closed: (original)retriever rank 1 of 20 · ranker position 1 · patched the right function yes · exact restore yes
Trace
failing tests and errors
tests/test_ioutils.py::TestSpooledBytesIO::test_auto_rollover tests/test_ioutils.py::TestSpooledBytesIO::test_buf_property tests/test_ioutils.py::TestSpooledBytesIO::test_buffer_write_rollover_uses_byte_count tests/test_ioutils.py::TestSpooledBytesIO::test_closed_file_method_valueerrors tests/test_ioutils.py::TestSpooledBytesIO::test_compare_different_instances tests/test_ioutils.py::TestSpooledBytesIO::test_compare_err tests/test_ioutils.py::TestSpooledBytesIO::test_compare_not_equal_instances tests/test_ioutils.py::TestSpooledBytesIO::test_compare_two_equal_instances tests/test_ioutils.py::TestSpooledBytesIO::test_flush_after_rollover tests/test_ioutils.py::TestSpooledBytesIO::test_getvalue_norollover tests/test_ioutils.py::TestSpooledBytesIO::test_getvalue_rollover tests/test_ioutils.py::TestSpooledBytesIO::test_invalid_type tests/test_ioutils.py::TestSpooledBytesIO::test_io_error_negative_truncate tests/test_ioutils.py::TestSpooledBytesIO::test_isatty tests/test_ioutils.py::TestSpooledBytesIO::test_iter tests/test_ioutils.py::TestSpooledBytesIO::test_len_no_rollover tests/test_ioutils.py::TestSpooledBytesIO::test_len_rollover tests/test_ioutils.py::TestSpooledBytesIO::test_next tests/test_ioutils.py::TestSpooledBytesIO::test_pos_property tests/test_ioutils.py::TestSpooledBytesIO::test_readlinetests/test_ioutils.py::TestSpooledBytesIO::test_auto_rollover
E ValueError: I/O operation on closed file.tests/test_ioutils.py::TestSpooledBytesIO::test_buf_property
E ValueError: I/O operation on closed file.
tests/test_ioutils.py::TestSpooledBytesIO::test_auto_rollover in the static call graph. Kept 20 candidates, ranked by spectrum score (Ochiai), call graph and BM25 break ties.candidates in retriever order
boltons/ioutils.py::SpooledIOBase._checkClosedboltons/ioutils.py::SpooledIOBase.closedboltons/ioutils.py::SpooledIOBase.__init__boltons/ioutils.py::SpooledStringIO.__init__boltons/ioutils.py::SpooledStringIO.bufferboltons/ioutils.py::SpooledBytesIO.bufferboltons/ioutils.py::SpooledStringIO.writeboltons/ioutils.py::SpooledBytesIO.writeboltons/ioutils.py::SpooledIOBase.closeboltons/ioutils.py::SpooledIOBase.__del__boltons/ioutils.py::SpooledIOBase.__enter__boltons/ioutils.py::SpooledIOBase.posboltons/ioutils.py::SpooledIOBase.isattyboltons/ioutils.py::SpooledBytesIO.tellboltons/ioutils.py::SpooledIOBase.getvalueboltons/ioutils.py::SpooledIOBase.bufboltons/ioutils.py::SpooledStringIO.tellboltons/ioutils.py::SpooledBytesIO.seekboltons/ioutils.py::SpooledIOBase.writelinesboltons/ioutils.py::SpooledIOBase.flush
boltons/ioutils.py::SpooledIOBase._checkClosedboltons/ioutils.py::SpooledIOBase.closedboltons/ioutils.py::SpooledIOBase.__init__boltons/ioutils.py::SpooledStringIO.__init__boltons/ioutils.py::SpooledStringIO.buffer
read boltons/ioutils.py::SpooledBytesIO.buffer
The failing tests all raise 'ValueError: I/O operation on closed file.' This suggests the underlying buffer is closed when write operations are attempted. SpooledBytesIO.buffer (candidate 6) is likely accessed during write operations, and if it's closed, writes would fail. This is the most probable source of the bug given the error pattern.
The error 'I/O operation on closed file' occurs when trying to write to a closed SpooledBytesIO. The buffer property is accessed during write operations, and if the underlying buffer is closed, writes fail. Adding a closed check in the buffer property ensures that any access to the buffer raises the same error as other operations on closed files, maintaining consistency and preventing the error from propagating from deeper in the code.
--- a/boltons/ioutils.py+++ b/boltons/ioutils.py@@ -337,4 +337,6 @@ @property def buffer(self):+ if self.closed:+ raise ValueError('I/O operation on closed file.') try: return self._buffer
tests: 10 failing (target tests)
tests/test_ioutils.py::TestSpooledBytesIO::test_auto_rollover tests/test_ioutils.py::TestSpooledBytesIO::test_buf_property tests/test_ioutils.py::TestSpooledBytesIO::test_buffer_write_rollover_uses_byte_count tests/test_ioutils.py::TestSpooledBytesIO::test_closed_file_method_valueerrors tests/test_ioutils.py::TestSpooledBytesIO::test_compare_different_instances tests/test_ioutils.py::TestSpooledBytesIO::test_compare_err tests/test_ioutils.py::TestSpooledBytesIO::test_compare_not_equal_instances tests/test_ioutils.py::TestSpooledBytesIO::test_compare_two_equal_instances tests/test_ioutils.py::TestSpooledBytesIO::test_flush_after_rollover tests/test_ioutils.py::TestSpooledBytesIO::test_getvalue_norollover
read boltons/ioutils.py::SpooledIOBase.__init__
To understand how the closed state is managed in SpooledIOBase, we need to see the __init__ method to check if there's a _closed attribute or similar.
model reasoning (excerpt)
We have a recursion error because we added a check for `self.closed` which in turn accesses `self.buffer.closed` (since `closed` property returns `self.buffer.closed`). This causes infinite recursion.
We need to avoid using `self.closed` in the buffer property because it depends on the buffer being available.
Instead, we should check if the SpooledBytesIO instance is closed by looking at an internal flag. Let's look at the SpooledIOBase class to see how `closed` is implemented and if there's an internal flag.
From the earlier read of candidate [2]:
SpooledIOBase.closed (boltons/ioutils.py)
154 | @property
155 | def closed(self):
156 | return self.buffer.closed
So indeed, `closed` depends on `buffer`. Therefore, we cannot use `self.closed` in the buffer property.
We need to find another way to check if the SpooledBytesIO is closed. Let's look at the SpooledIOBase class for an internal flag.
Since we don't have the full source, we can infer from the `__init__` and `close` methods.
Let's read the SpooledIOBase class (candidate [1] and [9]) to see if there's a `_closed` attribute or similar.
However, we are limited in reads. Let's try to read the SpooledIOBase class to see its attributes.
But note: we have only 2 reads left. We must be cautious.
Alternatively, we can look at the `close` method (candidate [9]) to see how it sets the closed state.
Let's read candidate [9]: SpooledIOBase.close
But wait, we are currentlyThe _checkClosed method was raising an error when the file was NOT open, which is the opposite of the intended behavior. The method should raise when the file is closed. Changing the condition from 'if not (self.closed)' to 'if self.closed' fixes this logic error.
--- a/boltons/ioutils.py+++ b/boltons/ioutils.py@@ -76,5 +76,5 @@ def _checkClosed(self, msg=None): """Raise a ValueError if file is closed"""- if not (self.closed):+ if self.closed: raise ValueError('I/O operation on closed file.' if msg is None else msg)
tests: all tests pass
model reasoning (excerpt)
We have a recursion error because our patch caused infinite recursion: checking `self.closed` in the buffer property, and `self.closed` likely accesses `self.buffer.closed` (from candidate 2), which then calls the buffer property again.
Let's look at candidate 2: SpooledIOBase.closed.
We need to see the closed property to understand the dependency.
But first, let's revert our patch and think differently.
The error is that we get "I/O operation on closed file" when we shouldn't. The _checkClosed method (candidate 1) is raising the error when the file is NOT closed? Wait, let's read candidate 1 again:
```
76 | def _checkClosed(self, msg=None):
77 | """Raise a ValueError if file is closed"""
78 | if not (self.closed):
79 | raise ValueError('I/O operation on closed file.'
80 | if msg is None else msg)
```
This is clearly wrong: it raises an error when the file is NOT closed. The condition should be `if self.closed:` to raise when closed.
But note: the error message says "I/O operation on closed file", so we want to raise when the file is closed.
So the bug is in _checkClosed: it raises when the file is open, and does nothing when closed.
That would cause operations to be allowed on closed files? Actually, no: the test is getting an error on closed file, meaning that the error is being raised when the file is closed? Wait, the test error is:
```
E ValueError: I/O operation on closed file.
```
Final patch
--- a/boltons/ioutils.py+++ b/boltons/ioutils.py@@ -76,5 +76,5 @@ def _checkClosed(self, msg=None): """Raise a ValueError if file is closed"""- if not (self.closed):+ if self.closed: raise ValueError('I/O operation on closed file.' if msg is None else msg)